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An MSO-PC group files at least two federal returns, and a multi-state group files a state return per entity per state where it has nexus. Four things drive the answers: how each entity is classified, how the management fee is priced and substantiated, where the income is apportioned, and how the friendly owner’s personal return is affected. This page assembles the question list a CPA needs.

Prerequisites

  • Both entities formed with EINs
  • Bookkeeping current and per-entity
  • A CPA with multi-entity and healthcare experience

The entity-level questions

The PC

The S election interacts with the friendly owner’s personal taxes. Pass-through income flows to their return, which means the structure’s design affects their tax position. This is one of several reasons the clinician-owner needs their own advisors, and it should be discussed before the election, not after.

The MSO

The multi-state questions

Each entity, in each state where it operates: A ten-state group’s MSO files in eleven jurisdictions. Each PC files in one. That is a real compliance load and a real cost.

Transfer pricing hygiene

The management fee is a transaction between related parties, which brings it within the scope of IRC § 482, the IRS’s authority to allocate income among commonly controlled entities to reflect arm’s-length results.2 The arm’s-length principle does double duty here. The same fee must satisfy tax transfer pricing and healthcare fair market value analysis. Fortunately they point in the same direction: a fee that is FMV for services actually rendered is also defensible as arm’s-length pricing. What creates exposure is a fee set to move income between jurisdictions, for instance, a fee sized to strip income from a high-tax state into a low-tax one. That is a § 482 problem and, separately, an FMV problem. Keep: the FMV analysis, the cost basis for the fee, the allocation methodology across PCs, the invoices, and evidence of actual payment.

Intercompany loans

Loans between the entities must carry interest at no less than the applicable federal rate for the note’s term class. Below-AFR related-party loans trigger imputed interest under IRC § 7872 and invite § 482 recharacterization.3 The IRS publishes AFRs monthly. See Intercompany loans between MSO and PC.

Information returns

Both entities have their own obligations: Two employers means two sets of W-2s. A clinician employed by the PC gets a PC W-2; an administrator gets an MSO W-2. Someone who moved between entities mid-year gets both.

The CPA question list

Bring these to the engagement:
  • Should the PC elect S-corp status, and what are the consequences for the clinician-owner personally?
  • What is the deadline for that election given our formation date?
  • Does our state recognize the S election, and does it impose entity-level tax anyway?
  • Should the MSO be an LLC or a C-corp given our raise timeline, and when should we convert?
  • Is QSBS relevant, and what would we need to do now to preserve eligibility?
  • What are our nexus and filing obligations in each operating state, for each entity?
  • How should management fee income be apportioned across states?
  • Does our management fee methodology hold up as arm’s-length under § 482?
  • What documentation should we maintain to support it?
  • What rate must our intercompany loans carry, and how should accrued interest be handled?
  • Are any of our retail product sales subject to sales tax?
  • What estimated tax payments should each entity be making, and from which account?
  • How should credentialing-period losses in a new PC be treated?

Practical hygiene

1

Fund a tax reserve account

In the MSO. Estimated taxes set aside so they aren’t mistaken for working capital.
2

Keep per-entity books clean

Tax filings are per entity. Consolidated-only books make every filing an excavation.
3

Retain the FMV and transfer pricing documentation

Contemporaneously, not reconstructed.
4

Calendar every filing deadline per entity per state

On the compliance calendar. See Set up your compliance calendar.
5

Review annually, and on every structural change

New state, new entity, fee change, or conversion.

Common failure modes

Sources

  1. IRC § 11(b). 26 U.S.C. § 11.
  2. IRC § 482. 26 U.S.C. § 482.
  3. IRC § 7872; IRS, Applicable Federal Rates.